posted on 2023-01-31, 10:18authored byZorada Swart
<p>This dataset include the listed multiple files. </p>
<ul>
<li>Amino acid sequences of the 23 curated <em>D. siricidicola</em> genes potentially involved in parasitism and host immunomodulation.The files for the sequencing appear as FASTA format and can open with: plain text editor, e.g., TextEdit, or sequence alignment software, e.g., MEGAX</li>
<li>Results of local BLAST searches of 11 <em>Steinernema carpocapsae</em> (Sc) and 1 <em>S. glaseri</em> (Sg) parasitism and immunomodulation genes performed against the genome and proteome of <em>D. siricidicola</em>. this apear as CSV format (spreadsheets) and can open with TextEdit, MS Excel</li>
<li>List of orthogroups with the gene IDs from 17 nematode species assigned to each by the algorithm OrthoFinder. It include the file in plain text format which can open with TextEdit</li>
<li>Orthologues between the relevant species pairs, namely <em>S. carpocapsae</em> (SCAR) with <em>D. siricidicola</em> (DSIR), and <em>S. glaseri</em> (SGLA) with <em>D. siricidicola</em>.this is in CSV format and can open with TextEdit, MS Excel</li>
<li>Results of hmmsearch function of <em>D. siricidicola</em> genes using a serine protease and serine protease inhibitor (serpin) hidden Markov model, respectively in plain text format and can open with TextEdit</li>
<li>Results of comparing the 23 curated <em>D. siricidicola</em> parasitism/host immunomodulation genes with the InterPro database:TSV format and open with: TextEdit, MS Excel.</li>
</ul>
Funding
Tree Protection Co-operative Programme
DSI-NRF Centre of Excellence in Plant Health Biotechnology