DATASET
Lung microbiome metadata.xlsx (23.56 kB)
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AS-PT1BAL_S11_L001_R1_001.fastq.gz (13.73 MB)
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AS-PT1BAL_S11_L001_R2_001.fastq.gz (19.33 MB)
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AS-PT2BAL_S12_L001_R1_001.fastq.gz (92.61 MB)
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AS-PT2BAL_S12_L001_R2_001.fastq.gz (168.4 MB)
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AS-PT3BAL_S13_L001_R1_001.fastq.gz (11.3 MB)
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AS-PT3BAL_S13_L001_R2_001.fastq.gz (15.86 MB)
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AS-PT4BAL_S14_L001_R1_001.fastq.gz (30.94 MB)
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AS-PT4BAL_S14_L001_R2_001.fastq.gz (43.35 MB)
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AS-PT5BAL_S7_L001_R1_001.fastq.gz (3.5 MB)
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AS-PT5BAL_S7_L001_R2_001.fastq.gz (5.53 MB)
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AS-PT10BAL_S8_L001_R1_001.fastq.gz (27.23 MB)
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AS-PT10BAL_S8_L001_R2_001.fastq.gz (42.78 MB)
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AS-PT12BAL_S9_L001_R1_001.fastq.gz (20.34 MB)
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AS-PT12BAL_S9_L001_R2_001.fastq.gz (32.57 MB)
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AS-PT14BAL_S10_L001_R1_001.fastq.gz (45.73 MB)
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AS-PT14BAL_S10_L001_R2_001.fastq.gz (71.86 MB)
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AS-PT15BAL_S47_L001_R1_001.fastq.gz (6.49 MB)
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AS-PT15BAL_S47_L001_R2_001.fastq.gz (10.39 MB)
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JG-1515745_S1_L001_R1_001.fastq.gz (15.49 MB)
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Lung microbiome HIV/TB
This file contains the 16S rRNA sequencing data of individual sputum and bronchoalveolar lavage samples, as well as the associated metadata.
The specimens are grouped by control (HIV only), HIV with pneumonia and HIV with TB. They are 16S rRNA sequences of sputum and BAL of patients with HIV/pneumonia and TB.
The Next Generation sequence files were analysed in QIIME 2 and R studio. The data is summarised in the respective taxa tables in Excel.
