University of Pretoria
Browse
1/2
23 files

Phylogenetic analysis of the Talarmyces funiculosus and related species

journal contribution
posted on 2024-05-24, 10:25 authored by Cobus VisagieCobus Visagie

Phylogenetic analysis of the Talarmyces funiculosus and related species published in the manuscript 'Phylogenetic analysis of the Talarmyces funiculosus and related species'. Files include the dataset, alignments and tree files.

Datasets were aligned using the G–INS–i setting in MAFFT v. 7.490 (Katoh and Standley, 2013) and manually trimmed and adjusted in Geneious Prime where necessary. Each dataset was analysed using Maximum Likelihood (ML) in IQtree v. 2.2.2.7 (Minh et al., 2020) and applying the General Time Reversible nucleotide substitution model with gamma distribution with invariant sites (GTR +G +I). Datasets were partitioned based on introns, exons and codon positions. Confidence in nodes was calculated using bootstrap analyses with 1000 replicates.

Funding

Future Leaders African Independent Research (FLAIR), Grant Number: FLR\R1\201831

History

Department/Unit

Forestry and Agricultural Biotechnology Institute

Sustainable Development Goals

  • 2 Zero Hunger
  • 15 Life on Land

Usage metrics

    Natural and Agricultural Sciences

    Licence

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC