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        Note that additional data was saved in multiqc_data_1 when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.12

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2023-06-01, 12:01 based on data in: /mnt/lustre/users/apostmasmidt/Deladenus/RNASeqMacrogen2023/hisat/summary

        General Statistics

        Showing 21/21 rows.
        Sample Name% Aligned
        C587R1.hisat
        80.3%
        C587R2.hisat
        75.1%
        C587R3.hisat
        76.7%
        C595R1.hisat
        72.3%
        C595R2.hisat
        75.9%
        C595R3.hisat
        70.4%
        C756R1.hisat
        74.8%
        C756R2.hisat
        83.0%
        C756R3.hisat
        77.2%
        C788R1.hisat
        77.6%
        C788R2.hisat
        81.6%
        C788R3.hisat
        80.2%
        P587R1.hisat
        79.6%
        P587R2.hisat
        74.8%
        P587R3.hisat
        80.2%
        P756R1.hisat
        82.7%
        P756R2.hisat
        85.1%
        P756R3.hisat
        78.6%
        P788R1.hisat
        78.1%
        P788R2.hisat
        80.7%
        P788R3.hisat
        78.7%

        HISAT2

        HISAT2 is a fast and sensitive alignment program for mapping NGS reads (both DNA and RNA) against a reference genome or population of reference genomes.DOI: 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

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        MultiQC v1.12 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.