| Pathways | overlap_size | pathway_size | p-value (raw) | p-value |
|---|---|---|---|---|
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 2 | 2 | 0.02011 | 0.07114 |
| ubiquinol-10 biosynthesis | 2 | 2 | 0.02011 | 0.07114 |
| (S)-reticuline biosynthesis | 2 | 3 | 0.055 | 0.09681 |
| glutamate biosynthesis/degradation | 1 | 1 | 0.14483 | 1.0 |
| leukotriene biosynthesis | 0 | 1 | 1.0 | 1.0 |
Full data tables from pathway analysis, module analysis and activity network are stored in the 'tsv/' directory. The tsv files can be imported into a spreadsheet program, e.g. MS Excel. Under the 'sif/' directory are files intended for Cytoscape (cytoscape.org) visualization. Please refer to Cytoscape's guides for details. Details of this run are recorded in file mummichog.log.