University of Pretoria
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Differential gene expression data with significant genes found in Deladenus siricidicola

dataset
posted on 2024-03-28, 11:23 authored by Sumari VenterSumari Venter, Alisa Postma, Bernard SlippersBernard Slippers
<p>File 1: Contains StringTie data that have transcripts for each gene identified in the parasitic samples of <em>Deladenus siricidicola,</em> these<em> </em>were aligned using RNA-seq data.</p> <p>File 2: Contains the featurecounts data used for differential gene expression analysis.</p> <p>File 3: Contains all the raw RNA sequencing information for all the samples submitted.</p> <p>File 4: The MultiCQ report with the HISAT2 data that shows all the sequenced samples and their percentage alignment to the <em>D. siricidicola</em> genome.</p> <p>File 5: Data containing all the downregulated genes identified from the volcano plot analysis.</p> <p>File 6: Data containing all the upregulated genes identified from the volcano plot analysis.</p> <p>File 7: Data from the raw Principal Component Analysis (PCA).</p> <p>File 8: Significant genes identified from differential gene expression analysis with their corresponding p values.</p> <p>File 9: Transcripts per kilobase million (TPM) data from expression analysis.</p> <p>File 10: Significant Z scores for the differentially expressed data.</p>

Funding

Tree Protection Cooperative Programme (TPCP)

Centre of Excellence in Plant Health Biotechnology (CPHB)

History

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Department/Unit/School/Center

Biochemistry, Genetics and Microbiology

Sustainable Development Goals

  • 15 Life on Land