University of Pretoria
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DATASET
1_Metadata.xlsx (1.04 MB)
DATASET
2_Sopligotyping results and drug-resistance patterns of M.tuberculosis isolates.xls (183 kB)
DATASET
3_MTBDRplus Version 2.0_ Drug-susceptibility testing results.xlsx (62.23 kB)
DATASET
4_MTBDRsl Version 2.0_Drug susceptibility testing results.xlsx (16.68 kB)
DOCUMENT
Drug-susceptibility profiles of M.tuberculosis isolates.docx (114.21 kB)
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Spoligotypes of M.tuberculosis strains.pdf (844.74 kB)
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Phylogenetic tree (UPGMA TRee) of M.tuberculosis spoligotypes.pdf (1.83 MB)
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Geographical distribution of M.tuberculosis spoligotypes.png (599.4 kB)
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Pulmonary tuberculosis (PTB) symptomatic individuals, their sociodemographic characteristics, genetic diversity and drug resistance patterns of Mycobacterium tuberculosis strains

dataset
posted on 2023-03-06, 08:24 authored by Melese RetaMelese Reta, Nontuthuko Excellent Maningi, P. Bernard Fourie

This dataset described the entire number of adult holy water sites (HWS) attendees (≥18 years of age) who were screened for Pulmonary Tuberculosis (PTB) -suggestive symptoms at nine selected study zones (HWS) found across the study region. During the study period, a total of 10,313 adult HWS (≥ 18 years of age) were screened, and 560 individuals were PTB symptomatic and participated. Out of 560 PTB symptomatic HWS attendees who participated, 122 (21.8%) were Lowenstein- Jensen (LJ) culture-positive (bacteriologically confirmed cases). Their sociodemographic characteristics and PTB infection risk factors are detailed. All LJ culture-positive isolates were subjected to spoligotyping, resulting in 116 isolates with interpretable spoligo-patterns. We performed drug susceptibility testing for all 122 (LJ culture)-positive isolates using MTBDRplus v2 and MTBDRsl v2 line probe assays.  

Drug-susceptibility testing (DST) results for first and second line anti-TB drugs are detailed in this dataset. Furthermore, a prospective follow-up study on 438 PTB-symptomatic individuals with culture-negative test results was done to determine the prevalence of developing active TB disease subsequent to residing at a HWS. The duration of follow-up was 12 months, starting on the date that a negative culture result was obtained. Thus, 30 (6.8%) were infected with TB and developed active TB disease post-exposure to HWS. In general, in these attached datasets, details of the study participants, LJ culture-testing results, DST results, as well as genotyping findings of the isolates are illustrated.

History

Department/Unit

Medical Microbiology